Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs (Q110667805)

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

sponsor

National Research Foundation of Korea

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Natural Sciences and Engineering Research Council

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Canadian Institute for Advanced Research

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

main subject

Euglenidae

euglenids

1 reference

2

M. Kolisko

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Gertraud Burger

8

G. Burger

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Yana Eglit

3

Y. Eglit

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Patrick John Keeling

9

P.J. Keeling

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Anna Ewa Karnkowska

6

A. Karnkowska

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Gordon Lax

1

G. Lax

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Alastair Geoffrey Brinley Simpson

10

A.G.B. Simpson

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Brian S. Leander

7

B.S. Leander

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

author name string

W.J. Lee

4

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

N. Yubuki

5

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

publication date

June 2021

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

published in

Molecular Phylogenetics and Evolution

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

volume

159

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

page(s)

107088

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

107088

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

cites work

Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Leveraging single-cell genomics to expand the fungal tree of life

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Trimmomatic: a flexible trimmer for Illumina sequence data

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogeny of phagotrophic euglenids (Euglenozoa) as inferred from hsp90 gene sequences

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Application of spectral analysis to examine phylogenetic signal among euglenid SSU rDNA data sets (Euglenozoa)

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

PHYLOGENY OF PHAGOTROPHIC EUGLENIDS (EUGLENOZOA): A MOLECULAR APPROACH BASED ON CULTURE MATERIAL AND ENVIRONMENTAL SAMPLES1

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Higher classification and phylogeny of Euglenozoa

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

New phagotrophic euglenoid species (new genus Decastava; Scytomonas saepesedens; Entosiphon oblongum), Hsp90 introns, and putative euglenoid Hsp90 pre-mRNA insertional editing

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

On Keelungia pulex nov. gen. et nov. sp., a heterotrophic euglenoid flagellate that lacks pellicular plates (Euglenophyceae, Euglenida).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Transcriptome, proteome and draft genome of Euglena gracilis

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Identity of epibiotic bacteria on symbiontid euglenozoans in O2-depleted marine sediments: evidence for symbiont and host co-evolution

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Distribution and phylogeny of EFL and EF-1alpha in Euglenozoa suggest ancestral co-occurrence followed by differential loss

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Novel Predators Reshape Holozoan Phylogeny and Reveal the Presence of a Two-Component Signaling System in the Ancestor of Animals

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Plastid phylogenomics with broad taxon sampling further elucidates the distinct evolutionary origins and timing of secondary green plastids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

The euglenoid flagellates

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Between a Pod and a Hard Test: The Deep Evolution of Amoebae.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogenetic Relationships and Morphological Character Evolution of Photosynthetic Euglenids (Excavata) Inferred from Taxon-rich Analyses of Five Genes

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Marine Protists Are Not Just Big Bacteria

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Single-cell transcriptomics for microbial eukaryotes

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Calkinsia aureus Gen. et sp. nov:, a New Marine Euglenid

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

The tetrapyrrole synthesis pathway as a model of horizontal gene transfer in euglenoids.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Some flagellates (Protista) from tropical marine sediments

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Combining molecular data with classical morphology for uncultured phagotrophic euglenids (Excavata): a single-cell approach

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

The Molecular Diversity of Phagotrophic Euglenids Examined Using Single-cell Methods

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ploeotids Represent Much of the Phylogenetic Diversity of Euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Did trypanosomatid parasites have photosynthetic ancestors?

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Comparative morphology of the euglenid pellicle. II. Diversity of strip substructure.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Trends in the evolution of the euglenid pellicle

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Macroevolution of complex cytoskeletal systems in euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Morphological and molecular characterisation of Notosolenus urceolatus Larsen and Patterson 1990, a member of an understudied deep-branching euglenid group (petalomonads).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ultrastructure and molecular phylogenetic position of Neometanema parovale sp. nov. (Neometanema gen. nov.), a Marine phagotrophic euglenid with skidding motility

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Free-living heterotrophic euglenids from marine sediments of the Gippsland Basin, southeastern Australia

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Free-living benthic heterotrophic euglenids from Botany Bay, Australia

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

DNA barcoding in autotrophic euglenids: evaluation of COI and 18s rDNA.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Evolutionary History of the Enzymes Involved in the Calvin-Benson Cycle in Euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Cutadapt removes adapter sequences from high-throughput sequencing reads

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Eukaryote-to-eukaryote gene transfer gives rise to genome mosaicism in euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ultrafast approximation for phylogenetic bootstrap

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

PHYLOGENETIC RELATIONSHIPS OF SELECTED EUGLENOID GENERA BASED ON MORPHOLOGICAL AND MOLECULAR DATA1

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ectosymbiotic bacteria at the origin of magnetoreception in a marine protist

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogenetic analysis of phagotrophic, phototrophic and osmotrophic euglenoids by using the nuclear 18S rDNA sequence

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Protistan microbial observatory in the Cariaco Basin, Caribbean. II. Habitat specialization.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Full-length RNA-seq from single cells using Smart-seq2.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Phylogenetic position and inter-relationships of the osmotrophic euglenids based on SSU rDNA data, with emphasis on the Rhabdomonadales (Euglenozoa).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Construction of cDNA libraries: focus on protists and fungi

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Unusual mitochondrial genome structures throughout the Euglenozoa

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Gliding movement in Peranema trichophorum is powered by flagellar surface motility

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

New phagotrophic euglenids from deep sea and surface waters of the Atlantic Ocean (Keelungia nitschei, Petalomonas acorensis, Ploeotia costaversata)

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Free-living heterotrophic euglenids from freshwater sites in mainland Australia

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions of "primitive" eukaryotes.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

TransRate: reference-free quality assessment of de novo transcriptome assemblies

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Light and Electron Microscopic Description of a Colorless Euglenoid,Serpenomonas costatan. g., n. sp.1

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Morphostasis in a novel eukaryote illuminates the evolutionary transition from phagotrophy to phototrophy: description of Rapaza viridis n. gen. et sp. (Euglenozoa, Euglenida).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including parasitic species for better understanding transitions from a free-living to a parasitic lifestyle.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Single-cell genomics reveals organismal interactions in uncultivated marine protists.

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Reconstruction of the feeding apparatus in Postgaardi mariagerensis provides evidence for character evolution within the Symbiontida (Euglenozoa).

1 reference

https://api.crossref.org/v1/works/10.1016/j.ympev.2021.107088

Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria

1 reference