A functional twintron, 'zombie' twintrons and a hypermobile group II intron invading itself in plant mitochondria (Q92506431)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31915815%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

title

A functional twintron, 'zombie' twintrons and a hypermobile group II intron invading itself in plant mitochondria (English)

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30 April 2020

0 references

3

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30 April 2020

author name string

Simon Zumkeller

series ordinal

1

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30 April 2020

Philipp Gerke

series ordinal

2

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30 April 2020

publication date

1 March 2020

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30 April 2020

published in

Nucleic Acids Research

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30 April 2020

volume

48

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30 April 2020

issue

5

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30 April 2020

page(s)

2661-2675

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Creative Commons Attribution-NonCommercial 4.0 International

30 April 2020

copyright license

start time

9 January 2020

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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11 February 2021

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The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria

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11 February 2021

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Loss of a Trans-Splicing nad1 Intron from Geraniaceae and Transfer of the Maturase Gene matR to the Nucleus in Pelargonium

11 February 2021

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Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution

11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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11 February 2021

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A homing endonuclease with a switch: characterization of a twintron encoded homing endonuclease

11 February 2021

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Genome size increases in recently diverged hornwort clades

11 February 2021

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11 February 2021

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mCSF1, a nucleus-encoded CRM protein required for the processing of many mitochondrial introns, is involved in the biogenesis of respiratory complexes I and IV in Arabidopsis

11 February 2021

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11 February 2021

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Surprisingly high number of Twintrons in vertebrates

11 February 2021

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Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome

11 February 2021

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Loss of two introns from the Magnolia tripetala mitochondrial cox2 gene implicates horizontal gene transfer and gene conversion as a novel mechanism of intron loss

11 February 2021

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11 February 2021

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Origin and evolution of spliceosomal introns

11 February 2021

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Structural, functional and evolutionary relationships between homing endonucleases and proteins from their host organisms

11 February 2021

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A PORR domain protein required for rpl2 and ccmF(C) intron splicing and for the biogenesis of c-type cytochromes in Arabidopsis mitochondria.

11 February 2021

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Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade

11 February 2021

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Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons

11 February 2021

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

11 February 2021

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Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes

11 February 2021

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A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii

11 February 2021

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The sequence read archive

11 February 2021

1 reference

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An organellar maturase associates with multiple group II introns

11 February 2021

1 reference

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BLAST+: architecture and applications

11 February 2021

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The complete mitochondrial genome sequence of the hornwort Phaeoceros laevis: retention of many ancient pseudogenes and conservative evolution of mitochondrial genomes in hornworts

11 February 2021

1 reference

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A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

11 February 2021

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The complete mitochondrial genome sequence of the hornwort Megaceros aenigmaticus shows a mixed mode of conservative yet dynamic evolution in early land plant mitochondrial genomes.

11 February 2021

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VARNA: Interactive drawing and editing of the RNA secondary structure

11 February 2021

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Frequent, phylogenetically local horizontal transfer of the cox1 group I Intron in flowering plant mitochondria.

11 February 2021

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Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer

11 February 2021

1 reference

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Group II introns: structure, folding and splicing mechanism

11 February 2021

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Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae

11 February 2021

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The deepest divergences in land plants inferred from phylogenomic evidence

11 February 2021

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Domain structure and three-dimensional model of a group II intron-encoded reverse transcriptase

11 February 2021

1 reference

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Rapid isolation of high-quality total RNA from taxus and ginkgo

11 February 2021

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Many independent origins of trans splicing of a plant mitochondrial group II intron

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants.

11 February 2021

1 reference

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The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

11 February 2021

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Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications

11 February 2021

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An intronic enhancer regulates splicing of the twintron of Drosophila melanogaster prospero pre-mRNA by two different spliceosomes

11 February 2021

1 reference

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Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophytes

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Mosses share mitochondrial group II introns with flowering plants, not with liverworts

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Retrotransposition of a yeast group II intron occurs by reverse splicing directly into ectopic DNA sites

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Multiple homing pathways used by yeast mitochondrial group II introns

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Multiple acquisitions via horizontal transfer of a group I intron in the mitochondrial cox1 gene during evolution of the Araceae family

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Explosive invasion of plant mitochondria by a group I intron

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Group I twintrons: genetic elements in myxomycete and schizopyrenid amoeboflagellate ribosomal DNAs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

The gain of three mitochondrial introns identifies liverworts as the earliest land plants

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

In vivo mobility of a group I twintron in nuclear ribosomal DNA of the myxomycete Didymium iridis

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Two new group-II twintrons in the Euglena gracilis chloroplast are absent in basally branching Euglena species

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Extensive RNA editing of U to C in addition to C to U substitution in the rbcL transcripts of hornwort chloroplasts and the origin of RNA editing in green plants

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Evidence for the late origin of introns in chloroplast genes from an evolutionary analysis of the genus Euglena

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Transposable group II introns in fission and budding yeast. Site-specific genomic instabilities and formation of group II IVS plDNAs

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Twintrons are not unique to the Euglena chloroplast genome: structure and evolution of a plastome cpn60 gene from a cryptomonad

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

A complex twintron is excised as four individual introns

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

A group III twintron encoding a maturase-like gene excises through lariat intermediates

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Comparative and functional anatomy of group II catalytic introns--a review

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Group II twintron: an intron within an intron in a chloroplast cytochrome b-559 gene

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

A mixed group II/group III twintron in theEuglena gracilischloroplast ribosomal protein S3 gene: evidence for intron insertion during gene evolution

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

Chloroplast group III twintron excision utilizing multiple 5'- and 3'-splice sites

11 February 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=7049729

11 February 2021

Identifiers

DOI

10.1093/NAR/GKZ1194

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31915815%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31915815%20AND%20SRC:MED&resulttype=core&format=json

30 April 2020

PubMed publication ID

31915815

1 reference